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RNA-seq analysis and differential expression guide v1.0.0
Use this resource to follow an RNA-seq analysis from quality control to differentially expressed genes
New
- 197 downloads
- 124 likes
- 41 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install rna-seq-differential-expression-guideFirst time: connect the CLI with
npx --yes palatekit@latest loginThe prompt asks the assistant to explain preprocessing and quality control, normalization methods and statistical approaches such as DESeq2 or edgeR. It ends with visualization tips, such as heatmaps or volcano plots, and common pitfalls. You get a reproducible analysis plan.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- CC0-1.0
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What you get
- The full prompt, ready to paste
- Steps, normalization, statistics and visualization
- Variables to replace: ${dataQuality:high}, ${normalizationMethod:DESeq2}, ${visualizationTools:heatmap}
Good fit for
- Planning an expression analysis for a research project
- Learning the steps of an RNA-seq analysis before building a pipeline
Not for
Tags
- rna-seq
- bioinformatics
- expression
- genomics
- analysis
About
You say
“Compare DESeq2 and edgeR for a design with three replicates per condition.”
Prompt published by rmfsantos@uefs.br under the CC0-1.0 license, delivered in its original version.
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How to use it
- Paste the prompt into your assistant or agent
- Ask it to follow an RNA-seq analysis from quality control to differentially expressed genes
- Review and adjust the result
Content preview
Files
- LICENSE0.6 KB
- NOTICE-PALATEKIT.md0.5 KB
- rna-seq-differential-expression-guide.md0.8 KB
Origin and licence
Listed unmodified
- Author
- rmfsantos@uefs.br
- Source
- github.com/f/prompts.chat/blob/cecef6fc73c2c389770695a56252d331981727de/prompts.csv
- Licence
- CC0-1.0
Notice
« RNA-Seq Analysis and Differential Gene Expression » (rmfsantos@uefs.br, CC0-1.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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