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Set up AlphaFold 2 initial guess as a remote tool v1.0.0

Use this resource to install and validate the AlphaFold 2 initial-guess step as a remote tool

New

  • 419 downloads
  • 114 likes
  • 199 saves

Free

Install with the CLI

In a terminal, from the folder you want:

npx --yes palatekit@latest install af2-initial-guess-remote-setup

With no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.

First time: connect the CLI with

npx --yes palatekit@latest login

The agent follows the procedure for the AlphaFold 2 initial-guess step of the dl_binder_design repository, whose input is a structure and not a sequence. It installs the two environments, checks the launch and shares the tool through ToolUniverse Connect.

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Updated November 2, 2026

Card for the “Set up AlphaFold 2 initial guess as a remote tool” skill

Details

Generates with
Your agent's model
Licence
Apache-2.0

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What you get

  • SKILL.md : two environments and platform-specific paths
  • SKILL.md : local launch, checks and example
  • SKILL.md : sharing through ToolUniverse Connect and troubleshooting

Good fit for

  • You want to measure pae_interaction on a binder-target complex
  • You are auditing an existing install of this step

Not for

    Tags

    • remote tool
    • alphafold 2
    • dl_binder_design
    • deployment

    About

    You say

    “Set up the AlphaFold 2 initial-guess step and verify it with the provided example.”

    Card for the “Set up AlphaFold 2 initial guess as a remote tool” skill

    Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.

    Show more

    How to use it

    1. Install the skill in your agent's skills folder
    2. Ask your agent to install and validate the AlphaFold 2 initial-guess step as a remote tool
    3. Review and adjust the result

    Content preview

    Files

    • LICENSE11.1 KB
    • NOTICE-PALATEKIT.md0.5 KB
    • SKILL.md35.3 KB

    Origin and licence

    Listed unmodified

    Author
    mims-harvard
    Source
    github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/setup-af2ig-remote-tool
    Licence
    Apache-2.0

    Notice

    « setup-af2ig-remote-tool » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.

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