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Cloud molecular design tools v1.0.0

Use this resource to run open-source structural biology tools in the cloud

New

  • 523 downloads
  • 181 likes
  • 115 saves

Free

Install with the CLI

In a terminal, from the folder you want:

npx --yes palatekit@latest install cloud-molecular-design-tools

With no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.

First time: connect the CLI with

npx --yes palatekit@latest login

The agent picks the right tool (structure prediction, protein design, docking, affinity, dynamics), prepares input files and chains jobs. You get the API or MCP calls and the reading of results.

Mostly picked by

Updated November 2, 2026

Card for the “Cloud molecular design tools” skill

Details

Works in
Install guides
Generates with
Your agent's model
Licence
MIT

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What you get

  • SKILL.md: access, workflow, tool choice and reading results
  • references/: API reference, tool catalog, examples and workflows

Good fit for

  • You want to predict a protein structure without a local GPU
  • You want to chain sequence design and docking

Not for

    Tags

    • Tamarind
    • structure
    • docking

    About

    You say

    “Predict the structure of this sequence with a Tamarind tool, then run a docking job.”

    Card for the “Cloud molecular design tools” skill

    Skill published by k-dense-ai under the MIT license, delivered in its original version.

    Show more

    How to use it

    1. Install the skill in your agent's skills folder
    2. Ask your agent to run open-source structural biology tools in the cloud
    3. Review and adjust the result

    Content preview

    Files

    • LICENSE1.1 KB
    • NOTICE-PALATEKIT.md0.5 KB
    • references/api_reference.md12.3 KB
    • references/examples.md5.4 KB
    • references/tool_catalog.md3.9 KB
    • references/workflows.md11.6 KB
    • SKILL.md13.6 KB

    Origin and licence

    Listed unmodified

    Author
    k-dense-ai
    Source
    github.com/k-dense-ai/scientific-agent-skills/tree/5f2bc0341354fd5590aef76a533ada1e1e5b4e62/skills/tamarind
    Licence
    MIT

    Notice

    « tamarind » (k-dense-ai, MIT) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.

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