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gget: quick genomic lookups and a reproducible log v1.0.0

Use this resource to quickly query reference genomic databases with gget

New

  • 579 downloads
  • 161 likes
  • 213 saves

Free

Install with the CLI

In a terminal, from the folder you want:

npx --yes palatekit@latest install genomic-database-lookup-gget

With no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.

First time: connect the CLI with

npx --yes palatekit@latest login

The agent runs a gene, sequence or transcript lookup, or a BLAST search, with gget, then keeps a reproducibility log of the commands. You get first-pass results and a verifiable trail before any heavier tool.

Mostly picked by

Updated November 2, 2026

Card for the “gget: quick genomic lookups and a reproducible log” skill

Details

Works in
Install guides
Generates with
Your agent's model
Licence
MIT

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What you get

  • SKILL.md: installation and basic patterns
  • SKILL.md: common modules and quick examples
  • SKILL.md: reproducibility log and review checklist

Good fit for

  • You need the Ensembl ID of a gene before an analysis
  • You want a quick BLAST without setting up a local pipeline

Not for

    Tags

    • genomics
    • bioinformatics
    • gget
    • reproducibility

    About

    You say

    “Find the Ensembl ID for the BRCA2 gene and fetch its protein sequence.”

    Card for the “gget: quick genomic lookups and a reproducible log” skill

    Skill published by affaan-m under the MIT license, delivered in its original version.

    Show more

    How to use it

    1. Install the skill in your agent's skills folder
    2. Ask your agent to quickly query reference genomic databases with gget
    3. Review and adjust the result

    Content preview

    Files

    • LICENSE1 KB
    • NOTICE-PALATEKIT.md0.5 KB
    • SKILL.md5 KB

    Origin and licence

    Listed unmodified

    Author
    affaan-m
    Source
    github.com/affaan-m/ecc/tree/25278e7d7b6cf6e6a4e7a6c8e10f14ff22f0eb5b/skills/scientific-pkg-gget
    Licence
    MIT

    Notice

    « scientific-pkg-gget » (affaan-m, MIT) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.

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