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Genomic interval operations with polars-bio v1.0.0
Use this resource to run coordinate-aware genomic joins and interval calculations on Polars DataFrames
New
- 480 downloads
- 158 likes
- 125 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install genomic-interval-operationsWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent chooses the interval operation, respects coordinate conventions and reads or writes bioinformatics files lazily. You get Polars code with assembly and coordinate checks.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md: coordinate contract, operation choice and installation
- references/: bioframe migration, configuration, file I/O, intervals, pileup and SQL
Good fit for
- You join genomic regions by coordinates
- You are migrating a bioframe script to Polars
Not for
Tags
- intervals
- genomics
- Polars
About
You say
“Merge the BED regions of these two files and compute the average coverage.”
Skill published by k-dense-ai under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to run coordinate-aware genomic joins and interval calculations on Polars DataFrames
- Review and adjust the result
Content preview
Files
- LICENSE1.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- references/bioframe_migration.md4.9 KB
- references/configuration.md4.4 KB
- references/file_io.md11.7 KB
- references/interval_operations.md7.3 KB
- references/pileup_operations.md6 KB
- references/sql_processing.md5.7 KB
- SKILL.md12.8 KB
Origin and licence
Listed unmodified
- Author
- k-dense-ai
- Source
- github.com/k-dense-ai/scientific-agent-skills/tree/5f2bc0341354fd5590aef76a533ada1e1e5b4e62/skills/polars-bio
- Licence
- Apache-2.0
Notice
« polars-bio » (k-dense-ai, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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