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Genomic variant storage and queries v1.0.0

Use this resource to store and query genomic variant calls

New

  • 409 downloads
  • 100 likes
  • 134 saves

Free

Install with the CLI

In a terminal, from the folder you want:

npx --yes palatekit@latest install genomic-variant-storage

With no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.

First time: connect the CLI with

npx --yes palatekit@latest login

The agent creates or extends the dataset, ingests samples, runs region queries and exports subsets. You get ingestion and query code with quality checks.

Mostly picked by

Updated November 2, 2026

Card for the “Genomic variant storage and queries” skill

Details

Works in
Install guides
Generates with
Your agent's model
Licence
MIT

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What you get

  • SKILL.md: installation, cohort creation, queries and export
  • references/: verification steps and official references

Good fit for

  • You add samples to a cohort regularly
  • You need one genomic region across many samples

Not for

    Tags

    • variants
    • VCF
    • genomics

    About

    You say

    “Add this single-sample VCF to my cohort and export chr1 for all samples.”

    Card for the “Genomic variant storage and queries” skill

    Skill published by k-dense-ai under the MIT license, delivered in its original version.

    Show more

    How to use it

    1. Install the skill in your agent's skills folder
    2. Ask your agent to store and query genomic variant calls
    3. Review and adjust the result

    Content preview

    Files

    • LICENSE1.1 KB
    • NOTICE-PALATEKIT.md0.5 KB
    • references/verification.md6.1 KB
    • SKILL.md13.8 KB

    Origin and licence

    Listed unmodified

    Author
    k-dense-ai
    Source
    github.com/k-dense-ai/scientific-agent-skills/tree/5f2bc0341354fd5590aef76a533ada1e1e5b4e62/skills/tiledbvcf
    Licence
    MIT

    Notice

    « tiledbvcf » (k-dense-ai, MIT) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.

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