FreeSkills
Commits, branches and sync with the but CLI
- 361361 downloads
- 198198 likes
- 103103 saves
Works with
- Claude Code
- Codex
- Cursor
- and 3 more
GPU acceleration of a genomics workflow v1.0.0
Use this resource to accelerate a genomics workflow with Parabricks without removing the CPU path
New
- 519 downloads
- 201 likes
- 249 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install genomics-pipeline-gpu-accelerationWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent inventories the CPU steps, maps them to Parabricks tools, adds runtime switches that keep the CPU path as default, then compares outputs and run times. It gives no clinical interpretation or treatment advice. You get a two-path workflow and a comparison report.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- CC-BY-4.0
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What you get
- references/parabricks-tool-map.md: tool mapping
- references/comparison-checklist.md: comparison checklist
- references/nf-core-parabricks-map.md: nf-core mapping
Good fit for
- Your CPU pipeline is too slow and you want to test GPUs without replacing it
- You must show that GPU outputs match the CPU outputs
Not for
Tags
- genomics
- Parabricks
- GPU
- workflow
About
You say
“Add an optional Parabricks step to my nf-core pipeline and compare the outputs.”
Skill published by nvidia under the CC-BY-4.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to accelerate a genomics workflow with Parabricks without removing the CPU path
- Review and adjust the result
Content preview
Files
- BENCHMARK.md7.8 KB
- evals/evals.json5.4 KB
- LICENSE11.3 KB
- NOTICE-PALATEKIT.md0.5 KB
- references/comparison-checklist.md2.1 KB
- references/nf-core-parabricks-map.md3 KB
- references/parabricks-runtime-readiness.md2.5 KB
- references/parabricks-tool-map.md2.5 KB
- references/step-consolidation.md3.6 KB
- references/workflow-frameworks.md4.9 KB
- references/workflow-layout.md3.4 KB
- skill-card.md5.6 KB
- SKILL.md13.3 KB
- skill.oms.sig6.2 KB
Origin and licence
Listed unmodified
- Author
- nvidia
- Source
- github.com/nvidia/skills/tree/ca116d60beafe1b4459f0ab790b7b450912c56b0/skills/bionemo-genomics-workflow-acceleration
- Licence
- CC-BY-4.0
Notice
« genomics-workflow-acceleration » (nvidia, CC-BY-4.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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