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Reproducible genomics analysis pipelines v1.0.0

Use this resource to build a reproducible genomics analysis pipeline

New

  • 420 downloads
  • 142 likes
  • 146 saves

Free

Install with the CLI

In a terminal, from the folder you want:

npx --yes palatekit@latest install genomics-pipeline-workflows

With no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.

First time: connect the CLI with

npx --yes palatekit@latest login

The agent organizes the steps of sequencing data processing, picks a workflow manager and flags frequent pipeline errors. You get a traceable analysis chain with quality checks at each step.

Mostly picked by

Updated November 2, 2026

Card for the “Reproducible genomics analysis pipelines” skill

Details

Works in
Install guides
Generates with
Your agent's model
Licence
Apache-2.0

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What you get

  • SKILL.md: bioinformatics method and the agent's role
  • references/patterns.md: workflow, variant calling and RNA-seq patterns
  • references/sharp_edges.md: reference, version and data quality errors

Good fit for

  • You must rerun a sequencing analysis and get the same results
  • Your RNA-seq pipeline gives different results depending on the machine

Not for

    Tags

    • genomics
    • pipeline
    • ngs
    • bioinformatics
    • reproducibility

    About

    You say

    “Structure a variant calling pipeline with pinned tool versions and a quality check after each step.”

    Card for the “Reproducible genomics analysis pipelines” skill

    Skill published by omer-metin under the Apache-2.0 license, delivered in its original version.

    Show more

    How to use it

    1. Install the skill in your agent's skills folder
    2. Ask your agent to build a reproducible genomics analysis pipeline
    3. Review and adjust the result

    Content preview

    Files

    • LICENSE10.1 KB
    • NOTICE-PALATEKIT.md0.5 KB
    • references/patterns.md14.3 KB
    • references/sharp_edges.md8.1 KB
    • references/validations.md3.7 KB
    • SKILL.md1.1 KB

    Origin and licence

    Listed unmodified

    Author
    omer-metin
    Source
    github.com/omer-metin/skills-for-antigravity/tree/e8dcf4e8737921a10088bd5c9eb65e81f74c051f/skills/genomics-pipelines
    Licence
    Apache-2.0

    Notice

    « genomics-pipelines » (omer-metin, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.

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