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Metabolite and metabolic pathway analysis v1.0.0
Use this resource to link metabolites to metabolic pathways and diseases
New
- 599 downloads
- 223 likes
- 108 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install metabolite-pathway-analysisWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent identifies each metabolite, converts identifiers across databases, then maps pathways (Reactome, KEGG, MetaCyc) and disease associations.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md: metabolite identification and identifier conversion
- SKILL.md: pathway mapping and enzyme-disease links
Good fit for
- You have a list of metabolites to link to a pathway
- You want to combine metabolomics with gene-level pathway analysis
Not for
Tags
- metabolomics
- pathways
- HMDB
- KEGG
About
You say
“Which pathways do these three metabolites belong to, and which diseases are they linked to?”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to link metabolites to metabolic pathways and diseases
- Review and adjust the result
Content preview
Files
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md7.2 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-metabolomics-pathway
- Licence
- Apache-2.0
Notice
« tooluniverse-metabolomics-pathway » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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