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Knowledge wiki setup
- 418418 downloads
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Cancer classification with OncoTree v1.0.0
Use this resource to normalize a free-text cancer type to an OncoTree code
New
- 470 downloads
- 167 likes
- 165 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install oncotree-cancer-classificationWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent finds the OncoTree code closest to the description, verifies the code, explores the tissue hierarchy, then prepares its use in variant annotation or cohort selection.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md: search, code validation and tissue exploration
- SKILL.md: tool parameters and verified common codes
Good fit for
- You are standardizing free-text diagnoses for a cohort
- You must build an OncoKB or GDC cohort by tumor type
Not for
Tags
- OncoTree
- cancer
- nomenclature
- cohorts
About
You say
“Which OncoTree code matches ‘pancreatic ductal adenocarcinoma’?”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to normalize a free-text cancer type to an OncoTree code
- Review and adjust the result
Content preview
Files
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md11.2 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-cancer-classification
- Licence
- Apache-2.0
Notice
« tooluniverse-cancer-classification » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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