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Plant genomics and biology research v1.0.0
Use this resource to annotate plant genes and analyze their pathways across species
New
- 575 downloads
- 110 likes
- 170 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install plant-genomics-research-workflowsWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent queries PlantReactome, Ensembl Plants, POWO, UniProt and KEGG, and links the homeologous copies of polyploid genomes to their Arabidopsis equivalent. You get a gene annotation and a species comparison that account for duplications.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md : reasoning on polyploidy and homeologous copies
- SKILL.md : query chains across PlantReactome, Ensembl Plants and UniProt
- SKILL.md : species comparison with POWO taxonomy
Good fit for
- You annotate a wheat gene or another polyploid plant gene
- You want to follow a pathway such as flavonoid biosynthesis
Not for
Tags
- plant genomics
- polyploidy
- metabolic pathways
- arabidopsis
About
You say
“Which wheat genes match the Arabidopsis flavonoid pathway?”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to annotate plant genes and analyze their pathways across species
- Review and adjust the result
Content preview
Files
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md8.2 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-plant-genomics
- Licence
- Apache-2.0
Notice
« tooluniverse-plant-genomics » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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