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Public proteomics dataset search v1.0.0
Use this resource to find public proteomics datasets to reanalyze
New
- 476 downloads
- 108 likes
- 178 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install public-proteomics-dataset-searchWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent searches by species, keyword, accession or protein, retrieves metadata and, depending on the repository, download links or abundance matrices linked to clinical data.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md: input resolution and repository selection logic
- SKILL.md: metadata, download links and CPTAC matrices
Good fit for
- You want to reanalyze public data on a cancer type
- You are looking for every study that identified a given protein
Not for
Tags
- proteomics
- MassIVE
- PRIDE
- datasets
About
You say
“Find public proteomics datasets on breast cancer using TMT.”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to find public proteomics datasets to reanalyze
- Review and adjust the result
Content preview
Files
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md21.2 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-proteomics-data-retrieval
- Licence
- Apache-2.0
Notice
« tooluniverse-proteomics-data-retrieval » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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