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Reproducible queries on public databases v1.0.0

Use this resource to retrieve a fact from a named database in a reproducible way

New

  • 469 downloads
  • 109 likes
  • 134 saves

Free

Install with the CLI

In a terminal, from the folder you want:

npx --yes palatekit@latest install reproducible-database-queries

With no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.

First time: connect the CLI with

npx --yes palatekit@latest login

The agent picks the authoritative database, resolves identifiers, makes bounded calls and logs the query. You get results with their provenance and what is needed to repeat them.

Mostly picked by

Updated November 2, 2026

Card for the “Reproducible queries on public databases” skill

Details

Works in
Install guides
Generates with
Your agent's model
Licence
MIT

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What you get

  • SKILL.md: workflow, database choice, identifier formats and access limits
  • references/: one file per database (for example ChEMBL, AlphaFold, cBioPortal or Census)

Good fit for

  • You must verify a figure from a scientific or regulatory database
  • You need a complete list of entries with controlled pagination

Not for

    Tags

    • databases
    • API
    • reproducibility

    About

    You say

    “Retrieve all ChEMBL targets linked to this compound and state the database version.”

    Card for the “Reproducible queries on public databases” skill

    Skill published by k-dense-ai under the MIT license, delivered in its original version.

    Show more

    How to use it

    1. Install the skill in your agent's skills folder
    2. Ask your agent to retrieve a fact from a named database in a reproducible way
    3. Review and adjust the result

    Content preview

    Files

    • LICENSE1.1 KB
    • NOTICE-PALATEKIT.md0.5 KB
    • references/addgene.md1.8 KB
    • references/alphafold.md3 KB
    • references/alphavantage.md8.2 KB
    • references/bea.md14.7 KB
    • references/bindingdb.md3 KB
    • references/biogrid.md3.9 KB
    • references/bls.md9.3 KB
    • references/brenda.md2.9 KB
    • references/cbioportal.md7.6 KB
    • references/census.md9.2 KB
    • references/chebi.md3.6 KB
    • references/chembl.md2.7 KB
    • references/clinicaltrials.md3.5 KB
    • references/clinpgx.md1.5 KB
    • references/clinvar.md4.3 KB
    • references/cod.md3.1 KB
    • references/cosmic.md1.4 KB
    • references/dailymed.md1.8 KB
    • references/database_selection_guide.md10.2 KB
    • references/datacommons.md7.2 KB
    • references/dbsnp.md3.6 KB
    • references/disgenet.md1.4 KB
    • references/drugbank.md1.4 KB
    • references/ecb.md5.3 KB
    • references/emdb.md1.1 KB
    • references/ena.md10.3 KB
    • references/encode.md1.8 KB
    • references/ensembl.md14.5 KB
    • references/epa.md1.9 KB
    • references/eurostat.md7.5 KB
    • references/fda.md2.2 KB
    • references/federal-reserve.md6.9 KB
    • references/fred.md10.2 KB
    • references/gene-ontology.md4.5 KB
    • references/geo.md3.9 KB
    • references/gnomad.md3.6 KB
    • references/gtex.md4.2 KB
    • references/gwas-catalog.md1.7 KB
    • references/hca.md1.4 KB
    • references/hpo.md1.2 KB
    • references/human-protein-atlas.md1.2 KB
    • references/interpro.md3.5 KB
    • references/jaspar.md1.5 KB
    • references/kegg.md2.6 KB
    • references/lincs-l1000.md2.2 KB
    • references/materials-project.md4.9 KB
    • references/metabolomics-workbench.md3.9 KB
    • references/monarch.md1.5 KB
    • references/mousemine.md1.6 KB
    • references/myvariant.md1.3 KB
    • references/nasa-exoplanet-archive.md4.4 KB
    • references/nasa.md3.1 KB
    • references/ncbi-gene.md1.7 KB
    • references/ncbi-protein.md3.3 KB
    • references/ncbi-taxonomy.md3.8 KB
    • references/nist.md3.7 KB
    • references/noaa.md6.9 KB
    • references/omim.md3.5 KB
    • references/opentargets.md7.4 KB
    • references/openweathermap.md8.4 KB
    • references/pdb.md3.3 KB
    • references/pride.md1.4 KB
    • references/pubchem.md3.6 KB
    • references/quickgo.md1.5 KB
    • references/reactome.md3 KB
    • references/regulomedb.md2.1 KB
    • references/retrieval-contract.md7.4 KB
    • references/rummageo.md1.4 KB
    • references/sdss.md4.5 KB
    • references/sec-edgar.md8.6 KB
    • references/simbad.md12.7 KB
    • references/sra.md4.6 KB
    • references/string.md8 KB
    • references/tcga-gdc.md2 KB
    • references/treasury.md7.4 KB
    • references/ucsc-genome.md3.5 KB
    • references/uniprot.md7.4 KB
    • references/usgs.md10.2 KB
    • references/uspto.md4.7 KB
    • references/who.md9 KB
    • references/worldbank.md7.2 KB
    • references/zinc.md5.9 KB
    • SKILL.md27.3 KB

    Origin and licence

    Listed unmodified

    Author
    k-dense-ai
    Source
    github.com/k-dense-ai/scientific-agent-skills/tree/5f2bc0341354fd5590aef76a533ada1e1e5b4e62/skills/database-lookup
    Licence
    MIT

    Notice

    « database-lookup » (k-dense-ai, MIT) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.

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