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Spatial transcriptomics analysis v1.0.0
Use this resource to analyze gene expression across the space of a tissue
New
- 342 downloads
- 221 likes
- 172 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install spatial-transcriptomics-analysisWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent imports and checks the spatial data, preprocesses it, groups spots into tissue domains, identifies spatially variable genes and studies cell neighborhoods.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- code_examples.md: example code
- report_template.md: report template
- SKILL.md: import, clustering and neighborhood phases
Good fit for
- You have Visium data to analyze
- You are looking for genes that vary with position in the tissue
Not for
Tags
- spatial
- Visium
- tissue
- spatially variable genes
About
You say
“Find the spatially variable genes in these Visium sections.”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to analyze gene expression across the space of a tissue
- Review and adjust the result
Content preview
Files
- code_examples.md7.7 KB
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- report_template.md4 KB
- SKILL.md19.2 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-spatial-transcriptomics
- Licence
- Apache-2.0
Notice
« tooluniverse-spatial-transcriptomics » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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