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Ancestry decomposition PCA (SGDP) v1.0.0
Use this resource to place a genetic cohort in global context
New
- 426 downloads
- 150 likes
- 218 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install ancestry-pca-sgdpWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginFrom a VCF file and a population map, the agent finds variants shared with the bundled SGDP reference panel, runs a PCA with PLINK and separates your cohort from the reference populations. You get a publication-quality multi-panel figure with an interpretation guide.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- MIT
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What you get
- SKILL.md : pipeline (VCF, shared variants, PLINK PCA)
- SKILL.md : interpretation guide and citation
Good fit for
- You want to place a cohort against 164 populations
- You are preparing an ancestry figure for a paper
Not for
Tags
- genetics
- PCA
- populations
About
You say
“Project my VCF cohort onto the SGDP reference PCA and generate the figure.”
Skill published by Manuel Corpas under the MIT license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to place a genetic cohort in global context
- Review and adjust the result
Content preview
Files
- LICENSE1.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md4.9 KB
Origin and licence
Listed unmodified
- Author
- Manuel Corpas
- Source
- github.com/aaaaqwq/agi-super-team/tree/4c7b20bc52ad8d4a89fa3f5185abc455ef9248de/skills/claw-ancestry-pca
- Licence
- MIT
Notice
« claw-ancestry-pca » (Manuel Corpas, MIT) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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