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Metagenomics and microbiome analysis v1.0.0
Use this resource to analyze an amplicon or shotgun metagenomics study
New
- 490 downloads
- 243 likes
- 111 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install metagenomics-taxonomic-analysisWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent starts with the study context, classifies taxa with GTDB, checks the quality of assembled genomes (completeness, contamination) and links the microbiome to clinical phenotypes.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md: study steps, from taxonomy to phenotypes
- SKILL.md: edge cases, fallbacks and limitations
Good fit for
- You are analyzing an amplicon or shotgun microbiome study
- You want to link taxa to a disease
Not for
Tags
- metagenomics
- GTDB
- taxonomy
- microbiome
About
You say
“Which GTDB taxa dominate this fecal study, and are they linked to the disease?”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to analyze an amplicon or shotgun metagenomics study
- Review and adjust the result
Content preview
Files
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md5.1 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-metagenomics-analysis
- Licence
- Apache-2.0
Notice
« tooluniverse-metagenomics-analysis » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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