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Genome assemblies: availability, quality and replicons v1.0.0
Use this resource to find and check the quality of a microbial genome assembly
New
- 330 downloads
- 225 likes
- 155 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install microbial-genome-assembly-qcWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent resolves the organism, inventories assemblies, picks the best reference, extracts quality metrics and lists chromosomes and plasmids. It compares candidates when useful.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- evals/evals.json: evaluation cases
- SKILL.md: inventory, selection and quality metrics
Good fit for
- You are looking for the reference genome of a strain
- You want to count the plasmids of a bacterium
Not for
Tags
- microbial genome
- NCBI Datasets
- N50
- plasmids
About
You say
“What is the reference genome of Escherichia coli K-12, and how many plasmids does it have?”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to find and check the quality of a microbial genome assembly
- Review and adjust the result
Content preview
Files
- evals/evals.json1.8 KB
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md12.9 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-microbial-genome-characterization
- Licence
- Apache-2.0
Notice
« tooluniverse-microbial-genome-characterization » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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