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Local protein structure prediction v1.0.0
Use this resource to predict and compare protein structures locally
New
- 523 downloads
- 139 likes
- 140 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install protein-structure-prediction-2With no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent runs AlphaFold (ColabFold), Boltz-1 or Chai on your machine, retrieves experimental structures from the PDB and computes RMSD and TM-score. You get a report with 3D renders, pLDDT and PAE confidence plots and comparison tables.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- MIT
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What you get
- SKILL.md : agent role, dependencies and example queries
- SKILL.md : pLDDT and PAE confidence maps, structure comparison
Good fit for
- You compare a predicted structure against a reference structure
- You want to assess the confidence of a folding model
Not for
Tags
- proteins
- AlphaFold
- biology
About
You say
“Predict the structure of this sequence and compare it with the experimental PDB structure.”
Skill published by aaaaqwq under the MIT license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to predict and compare protein structures locally
- Review and adjust the result
Content preview
Files
- LICENSE1.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md1.6 KB
Origin and licence
Listed unmodified
- Author
- aaaaqwq
- Source
- github.com/aaaaqwq/agi-super-team/tree/4c7b20bc52ad8d4a89fa3f5185abc455ef9248de/skills/struct-predictor
- Licence
- MIT
Notice
« struct-predictor » (aaaaqwq, MIT) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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