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Protein structure rendering and analysis v1.0.0
Use this resource to visualize, align and render protein structures with PyMOL
New
- 571 downloads
- 234 likes
- 143 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install protein-structure-renderingWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent runs PyMOL on the host through uv with software rendering, so no GPU or display is needed. It produces images, superimposes structures, measures distances and contacts, highlights binding sites and colors by B-factor or pLDDT. It does not handle docking, molecular dynamics or sequence-only analysis.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md: prerequisites, PyMOL license notice and render script example
- references/RECIPES.md: analysis and rendering recipes
Good fit for
- You want an image of a protein's binding site for an article
- You superimpose two structures to compare them
Not for
Tags
- PyMOL
- protein
- structure
- rendering
About
You say
“Make an image of the protein with its active site highlighted, colored by pLDDT.”
Skill published by google-deepmind under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to visualize, align and render protein structures with PyMOL
- Review and adjust the result
Content preview
Files
- LICENSE11.3 KB
- NOTICE-PALATEKIT.md0.5 KB
- references/citation.bib0.1 KB
- references/PYMOL_REFERENCE.md5.5 KB
- references/RECIPES.md11.4 KB
- SKILL.md6.6 KB
Origin and licence
Listed unmodified
- Author
- google-deepmind
- Source
- github.com/google-deepmind/science-skills/tree/4de6786171f1479026da5d3a00f110703c8ba35e/skills/pymol
- Licence
- Apache-2.0
Notice
« pymol » (google-deepmind, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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