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Cancer genomics analysis with TCGA and GDC v1.0.0
Use this resource to analyze a TCGA cohort by cancer type
New
- 552 downloads
- 152 likes
- 243 saves
Free
Install with the CLI
In a terminal, from the folder you want:
npx --yes palatekit@latest install tcga-cancer-genomics-analysisWith no option, the skill goes to ~/.agents/skills/; add --agent claude-code (or codex, cursor…) to target an agent.
First time: connect the CLI with
npx --yes palatekit@latest loginThe agent first defines the cohort in the GDC, then computes mutation frequencies, clinical data and survival curves. It reports sample size and p-value, and notes that these cohorts are not stratified by treatment.
Mostly picked by
Updated November 2, 2026
Previews
Details
- Install guides
- Generates with
- Your agent's model
- Licence
- Apache-2.0
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What you get
- SKILL.md: cohort definition and analysis phases
- SKILL.md: mutations, survival and copy number via Progenetix
Good fit for
- You compare a mutation's frequency between two cancer types
- You are looking for a link between a mutation and survival in a cohort
Not for
Tags
- TCGA
- GDC
- mutations
- survival
About
You say
“What is the TP53 mutation frequency in lung adenocarcinoma?”
Skill published by mims-harvard under the Apache-2.0 license, delivered in its original version.
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How to use it
- Install the skill in your agent's skills folder
- Ask your agent to analyze a TCGA cohort by cancer type
- Review and adjust the result
Content preview
Files
- LICENSE11.1 KB
- NOTICE-PALATEKIT.md0.5 KB
- SKILL.md15.4 KB
Origin and licence
Listed unmodified
- Author
- mims-harvard
- Source
- github.com/mims-harvard/tooluniverse/tree/169d065deeb3e289b3ff36d665529a123bdad791/skills/tooluniverse-cancer-genomics-tcga
- Licence
- Apache-2.0
Notice
« tooluniverse-cancer-genomics-tcga » (mims-harvard, Apache-2.0) livré dans sa version d'origine : fiche en français et en anglais par PalateKit.
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